46. Bouwmeester J, Daly J, Zuchowicz N, Lager C, Henley EM, Quinn M, Hagedorn M (2023) Solar radiation, temperature and the reproductive biology of the coral Lobactis scutaria in a changing climate. Scientific Reports. 13:246. doi.org/10.1038/s41598-022-27207-6
45. Daly J, Bouwmeester J, Perry P, Page C, Khosla K, Kangas J, Lager C, Hadry K, Bischof JC, Hagedorn M (2023) The first proof of concept demonstration of nanowarming in coral tissues. Advanced Sustainable Systems. doi.org/10.1002/adsu.202300303
44. Lager C, Perry R, Daly J, Page C, Mizobe M, Bouwmeester J, Consiglio AN, Powell-Palm MJ, Hagedorn M (2023) Metrics of coral microfragment viability. bioRxiv. doi.org/10.1101/2023.01.03.522625
43. Page C, Perry R, Lager C, Daly J, Bouwmeester J, Henley EM, Hagedorn M (2022) Tank fouling community enhances coral microfragment growth. PeerJ. 11:e15723. doi.org/10.7717/peerj.15723
42. van der Meij S, Bouwmeester J, Bähr S (2023) DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea : Palaemonidae). Journal of Natural History. 57:25-37. doi.org/10.1080/00222933.2022.2158383
41. Bouwmeester J, Ben Hamadou R, Range P, Al Jamali F, Burt JA (2022) Spatial patterns of reef fishes and corals in the thermally extreme waters of Qatar. Frontiers in Marine Science. 9:989841. doi.org/10.3389/fmars.2022.989841 40. Bouwmeester J, Daly J, Quinn M, Henley EM, Lager C, Perry R, Page CA, Hagedorn M (2022) Securingalgalendosymbiontcommunities forreef-building corals. bioRxiv. doi.org/10.1101/2022.06.14.495714
39. Bouwmeester J, Daly J, Zuchowicz N, Hagedorn M (2022) Cryopreservation to Conserve Genetic Diversity of Reef-Building Corals. In: van Oppen MJH, Aranda Lastra M. (eds.) Coral Reef Conservation and Restoration in the Omics Age, Coral Reefs of the World. Springer Nature, Switzerland. doi.org/10.1007/978-3-031-07055-6_14
38. Bouwmeester J, Daly J, Henley EM, Parenti LR, Pitassy DE, Hagedorn M (2022) Conservation of coral reef fishes: a field-hard method to cryopreserve spermatogonial cells. Coral Reefs. 41: 855-861. doi.org/10.1007/s00338-022-02268-1
37. Bouwmeester J, Daly J, Quinn M, Hagedorn M (2022) Preparation of Symbiodiniaceae for cryopreservation and laser-warming. Protocols.io. doi.org/10.17504/protocols.io.14egn7momv5d/v1
36. Bouwmeester J, Daly J, Quinn M, Hagedorn M (2022) Isolation of Symbiodiniaceae from scleractinian coral hosts suitable for cryopreservation and laser-warming. Protocols.io. doi.org/10.17504/protocols.io.b4e3qtgn
35. Daly J, Hobbs RJ, Zuchowicz N, O'Brien JK, Bouwmeester J, Bay L, Quigley K, Hagedorn M (2022) Cryopreservation can assist gene flow on the Great Barrier Reef. Coral Reefs. 41:455-462. doi.org/10.1007/s00338-021-02202-x
34. Henley EM, Bouwmeester J, Jury CP, Toonen RJ, Quinn M, Lager CV, Hagedorn M (2022) Growth and survival among Hawaiian corals outplanted from tanks to an ocean nursery are driven by individual genotype and species differences rather than preconditioning to thermal stress. PeerJ. 10:e13112. doi.org/10.7717/peerj.13112
33. Henley EM, Quinn M, Bouwmeester J, Daly J, Lager C, Zuchowicz N, Bailey DW, Hagedorn M (2022) Contrasting reproductive strategies of two Hawaiian Montipora corals. Scientific Reports. 12:12255 doi.org/10.1038/s41598-022-16032-6
32. Torquato F, Bouwmeester J, Range P, Marshell A, Priest MA, Burt JA, Møller PR, Ben-Hamadou R (2022) Population genetic structure of a major reef-building coral species Acropora downingi in northeastern Arabian Peninsula. Coral Reefs. 41:743-752. https://doi.org/10.1007/s00338-021-02158-y
31. Bouwmeester J, Edwards AJ, Guest JR, Bauman AG, Berumen ML, Baird AH (2021) Latitudinal variation in reproductive synchrony among Acropora coral assemblages in the Indo-Pacific. Coral Reefs 40: 1411-1418. doi.org/10.1007/s00338-021-02129-3
30. Bouwmeester J, Coker DJ, Sinclair-Taylor TH, Berumen ML (2021) Broadcast spawning of Pocillopora verrucosa across the eastern and western coast of the central Red Sea. Ecosphere 12:e03340 doi.org/10.1002/ecs2.3340
29. Baird AH, Guest JR, Edwards AJ, Bauman AG, Bouwmeester J, Mera H, Abrego D, Alvarez-Noriega M, Babcock RC, Barbosa MB, Bonito V, Burt J, Cabaitan PC, Chang C-F, Chavanich S, Chen CA, Chen C-J, Chen W-J, Chung F-C, Connolly SR, Cumbo VR, Dornelas M, Doropoulos C, Eyal G, Eyal-Shaham L, Fadli N, Figueiredo J, Flot J-F, Gan S-H, Gomez E, Graham EM, Grinblat M, Gutiérrez-Isaza N, Harii S, Harrison PL, Hatta M, Ho NAJ, Hoarau G, Hoogenboom M, Howells EJ, Iguchi A, Isomura N, Jamodiong EA, Jandang S, Keyse J, Kitanobo S, Kongjandtre N, Kuo C-Y, Ligson C, Lin C-H, Low J, Loya Y, Maboloc EA, Madin JS, Mezaki T, Min C, Morita M, Moya A, Neo S-H, Nitschke MR, Nojima S, Nozawa Y, Piromvaragorn S, Plathong S, Puill-Stephan E, Quigley K, Ramirez-Portilla C, Ricardo G, Sakai K, Sampayo E, Shlesinger T, Sikim L, Simpson C, Sims CA, Sinniger F, Spiji DA, Tabalanza T, Tan C-H, Terraneo TI, Torda G, True J, Tun K, Vicentuan K, Viyakarn V, Waheed Z, Ward S, Willis B, Woods RM, Woolsey ES, Yamamoto HH, Yusuf S (2021) An Indo-Pacific coral spawning database. Scientific Data 8:35 doi.org/10.1038/s41597-020-00793-8
28. Chen Q, Beijbom O, Chan S, Bouwmeester J, Kriegman D (2021) A new deep learning engine for CoralNet. IEEE/CVF International Conference on Computer Vision Workshops (ICCVW) 3686-3695. doi.org/10.1109/ICCVW54120.2021.00412
27. Fanning LM, Al-Naimi MN, Range P, Ali A-SM, Bouwmeester J, Al-Jamali F, Burt JA, Ben-Hamadou R (2021) Applying the ecosystem services - EBM framework to sustainably manage Qatar's coral reefs and seagrass beds. Ocean & Coastal Management 205:105566 doi.org/10.1016/j.ocecoaman.2021.105566
26. Henley EM, Quinn M, Bouwmeester J, Daly J, Zuchowicz N, Lager C, Bailey DW, Hagedorn M (2021) Reproductive plasticity of Hawaiian Montipora corals following thermal stress. Scientific Reports. 11:12525 doi.org/10.1038/s41598-021-91030-8
25. Terraneo TI, Benzoni F, Arrigoni R, Baird AH, Mariappan KG, Forsman ZH, Wooster MK, Bouwmeester J, Marshell A, Berumen ML (2021) Phylogenomics of Porites from the Arabian Peninsula. Molecular Phylogenetics and Evolution. 2:107173 doi.org/10.1016/j.ympev.2021.107173
24. Webb AE, Engelen AH, Bouwmeester J, van Dijk I, Geerken E, Lattaud J, Engelen D, de Bakker BS, de Bakker DM (2021) Synchronized broadcast spawning by six invertebrates (Echinodermata and Mollusca) in the north-western Red Sea. Marine Biology. 168: 56 doi.org/10.1007/s00227-021-03871-6
22. Bouwmeester J, Riera R, Range P, Ben-Hamadou R, Samimi-Namin K, Burt JA (2020) Coral and reef fish communities in the thermally extreme Persian/Arabian Gulf: Insights into potential climate change effects. In: Rossi S, Bramanti L (eds) Perspectives on the Marine Animal Forests of the World. Springer, Cham, Switzerland, pp 63-86
21. Darling ES, McClanahan TR, Maina J, Gurney GG, Graham NAJ, Januchowski-Hartley F, Cinner JE, Mora C, Hicks CC, Maire E, Puotinen M, Skirving WJ, Adjeroud M, Ahmadia G, Arthur R, Bauman AG, Beger M, Berumen ML, Bigot L, Bouwmeester J, Brenier A, Bridge TCL, Brown E, Campbell SJ, Cannon S, Cauvin B, Chen CA, Claudet J, Denis V, Donner S, Estradivari, Fadli N, Feary DA, Fenner D, Fox H, Franklin EC, Friedlander A, Gilmour J, Goiran C, Guest J, Hobbs J-PA, Hoey AS, Houk P, Johnson S, Jupiter SD, Kayal M, Kuo C-y, Lamb J, Lee MAC, Low J, Muthiga N, Muttaqin E, Nand Y, Nash KL, Nedlic O, Pandolfi JM, Pardede S, Patankar V, Penin L, Ribas-Deulofeu L, Richards Z, Roberts TE, Rodgers KuS, Safuan CDM, Sala E, Shedrawi G, Sin TM, Smallhorn-West P, Smith JE, Sommer B, Steinberg PD, Sutthacheep M, Tan CHJ, Williams GJ, Wilson S, Yeemin T, Bruno JF, Fortin M-J, Krkosek M, Mouillot D (2019) Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature Ecology & Evolution 3:1341-1350
20. Berumen ML, Arrigoni R, Bouwmeester J, Terraneo TI, Benzoni F (2019) Corals of the Red Sea. In: Voolstra CR, Berumen ML (eds) Coral Reefs of the Red Sea. Springer, Cham, Switzerland, pp 123-155
19. Ziegler M, Roik A, Röthig T, Wild C, Rädecker N, Bouwmeester J, Voolstra CR (2019) Ecophysiology of Reef-Building Corals in the Red Sea. In: Voolstra CR, Berumen ML (eds) Coral Reefs of the Red Sea. Springer, Cham, Switzerland, pp 33-52
18. Hoeksema BW, Bouwmeester J, Range PR, Ben-Hamadou R (2018) A large aggregation of self-fragmenting mushroom corals in the Arabian/Persian Gulf. Ecology 99(5):1236-1238 doi: 10.1002/ecy.2139
17. Khalil MT, Bouwmeester J, Berumen ML (2017) Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea. PeerJ e3410 doi: 10.7717/peerj.3410
16. Bouwmeester J, Gatins R, Giles EC, Sinclair-Taylor TH, Berumen ML (2016) Spawning of coral reef invertebrates and a second spawning season for scleractinian corals in the central Red Sea. Invertebrate Biology 135:273-284 doi: 10.1111/ivb.12129
15. DiBattista JD, Roberts MB, Bouwmeester J, Bowen BW, Coker DJ, Lozano-Cortés DF, Choat JH, Gaither MR, Hobbs JPA, Khalil MT, Kochzius M, Myers RF, Pauley G, Robitzch VSN, Saenz-Agudelo P, Salas E, Sinclair-Taylor TH, Toonen RJ, Westneat MW, Williams ST, Berumen ML (2016) A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea. Journal of Biogeography 43:423-439 doi: 10.1111/jbi.12649
14. Keith SA, Maynard JA, Edwards AJ, Guest JR, Bauman AG, Acker J, Heron SF, Berumen ML, Bouwmeester J, Piromvaragorn S, Rahbek C, Baird AH (2016) Coral spawning predicted by rapid rise in ocean temperature. Proceedings B of the Royal Society 283: 20160011 doi: 10.1098/rspb.2016.0011
12. Bouwmeester J, Benzoni F, Baird AH, Berumen ML (2015) Cyphastrea kausti sp. n. (Cnidaria, Anthozoa, Scleractinia), a new species of reef coral from the Red Sea. ZooKeys 496:1-13 doi: 10.3897/zookeys.496.9433
11. Bouwmeester J and Berumen ML (2015) High reproductive synchrony of Acropora (Anthozoa: Scleractinia) in the Gulf of Aqaba, Red Sea. F1000Research 2015, 4:2 doi: 10.12688/f1000research.6004.1
10. Arrigoni R, Berumen ML, Terraneo TI, Caragnano A, Bouwmeester J, Benzoni F (2015) Forgotten in the taxonomic literature: resurrection of the scleractinian genus Sclerophyllia (Scleractinia, Lobophylliidae) from the Arabian Peninsula and its phylogenetic relationships. Systematics and Biodiversity 13(2):140-163 doi: 10.1080/14772000.2014.978915
9. Terraneo TI, Berumen ML, Arrigoni R, Waheed Z, Bouwmeester J, Caragnano A, Stefani F, Benzoni F (2014) Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships. ZooKeys 433:1-30 doi: 10.3897/zookeys.433.8036
8. Huang D, Benzoni F, Arrigoni R, Baird AH, Berumen ML, Bouwmeester J, Chou LM, Fukami H, Licuanan WY, Lovell ER, Meier R, Todd PA, Budd AF (2014) Towards a phylogenetic classification of reef corals: the Indo-Pacific genera Merulina, Goniastrea and Scapophyllia (Scleractinia, Merulinidae) Zoologica Scripta 43(5): 531-548 doi: 10.1111/zsc.12061
7. Ivanenko VN, Moudrova SV, Bouwmeester J, Berumen ML (2014) First report of tubular corallites on Stylophora caused by a symbiotic copepod crustacean. Coral Reefs 33(3): 637-637 doi: 10.1007/s00338-014-1186-6
6. Roder C, Berumen ML, Bouwmeester J, Papathanassiou E, Al-Suwailem A, Voolstra CR (2013) First biological measurements of deep-sea corals from the Red Sea. Scientific Reports 3:2802 doi: 10.1038/srep02802
5. Berumen ML, Hoey AS, Bass WH, Bouwmeester J, Catania D, Cochran JEM, Khalil MT, Miyake S, Mughal MR, Spaet JLY, Saenz-Agudelo P (2013) The status of coral reef ecology research in the Red Sea. Coral Reefs 32:737-748 doi: 10.1007/s00338-013-1055-8
4. Furby KA, Bouwmeester J, Berumen ML (2013) Susceptibility of central Red Sea corals during a major bleaching event. Coral Reefs 32:505-513 doi: 10.1007/s00338-012-0998-5
3. Bouwmeester J, Berumen ML, Baird AH (2011) Daytime broadcast spawning of Pocillopora verrucosa on coral reefs of the central Red Sea. Galaxea, Journal of Coral Reef Studies 13:23-24 doi: 10.3755/galaxea.13.23
2. Bouwmeester J, Khalil MT, De La Torre P, Berumen ML (2011) Synchronous spawning of Acropora in the Red Sea. Coral Reefs 30:1011-1011 doi: 10.1007/s00338-011-0796-5
1. Ammar MSA, Bouwmeester J, Riegl B, Hausser J, Keck A (2006) Possible Causes, Consequences of Changes and Future of Coral Reefs in Dahab, Gulf of Aqaba, Red Sea, Egypt. Egyptian Journal of Aquatic Research 32:160-179